If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ), 'gf_id' => 'HOM05D000976', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000976' ), 'data_identifier' => 'HOM05D000976', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000976', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '615', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p41500' => 'bna', 'A02p14210' => 'bna', 'A03p24940' => 'bna', 'A04p01740' => 'bna', 'A04p33470' => 'bna', 'A05p43700' => 'bna', 'A08p37280' => 'bna', 'A09p52540' => 'bna', 'A10p02140' => 'bna', 'Aa31LG10G14370' => 'aar', 'Aa31LG1G20950' => 'aar', 'Aa31LG1G26320' => 'aar', 'Aa31LG5G14120' => 'aar', 'Aa31sc377G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.56' => 'aag', 'Actinidia09872' => 'ach', 'Actinidia11065' => 'ach', 'Actinidia12641' => 'ach', 'Actinidia18354' => 'ach', 'Actinidia21632' => 'ach', 'Actinidia26518' => 'ach', 'Actinidia30654' => 'ach', 'Actinidia37842' => 'ach', 'Ah.01g014400' => 'amhyb', 'Ah.05g177930' => 'amhyb', 'Ah.12g062090' => 'amhyb', 'AL1G13120' => 'aly', 'AL2G25960' => 'aly', 'AL364U10010' => 'aly', 'AL3G13380' => 'aly', 'AL4G43850' => 'aly', 'AL5G41620' => 'aly', 'AL5G42480' => 'aly', 'Aqoxy1G02604' => 'aox', 'Aqoxy2G00013' => 'aox', 'Aqoxy3G01544' => 'aox', 'Aqoxy3G01545' => 'aox', 'Aqoxy3G02677' => 'aox', 'Aqoxy7G00865' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J433J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V1V91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIK43V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA8DWW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWRQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6V9H' => 'arhy', 'AT1G03620' => 'ath', 'AT1G67400' => 'ath', 'AT2G44770' => 'ath', 'AT3G03610' => 'ath', 'AT3G43400' => 'ath', 'AT3G60260' => 'ath', 'ATR0307G076' => 'atr', 'ATR0561G113' => 'atr', 'ATR0665G109' => 'atr', 'ATR0693G212' => 'atr', 'Atru.chr11.2311' => 'acertr', 'Atru.chr2.1602' => 'acertr', 'Atru.chr5.114' => 'acertr', 'Atru.chr6.3018' => 'acertr', 'AUR62005611' => 'cqu', 'AUR62013754' => 'cqu', 'AUR62023397' => 'cqu', 'AUR62024118' => 'cqu', 'AUR62036495' => 'cqu', 'AUR62037075' => 'cqu', 'AUR62037344' => 'cqu', 'BcaB01g03635' => 'bca', 'BcaB02g06913' => 'bca', 'BcaB02g07423' => 'bca', 'BcaB02g08180' => 'bca', 'BcaB02g08181' => 'bca', 'BcaB05g24282' => 'bca', 'BcaB06g29399' => 'bca', 'BcaC02g07112' => 'bca', 'BcaC02g10142' => 'bca', 'BcaC03g14839' => 'bca', 'BcaC05g24517' => 'bca', 'BcaC05g29866' => 'bca', 'BcaC05g30263' => 'bca', 'BcaC07g36949' => 'bca', 'BcaC08g45045' => 'bca', 'BcaC08g45047' => 'bca', 'BcaC09g47720' => 'bca', 'BcaNung05457' => 'bca', 'BcaNung07142' => 'bca', 'BcaNung07208' => 'bca', 'BNapus_Darmor_BZH_scaffold_162p00230' => 'bna', 'BNapus_Darmor_BZH_scaffold_78p00210' => 'bna', 'BolC1t05823H' => 'bol', 'BolC2t08444H' => 'bol', 'BolC3t15320H' => 'bol', 'BolC4t24787H' => 'bol', 'BolC4t28627H' => 'bol', 'BolC5t28983H' => 'bol', 'BolC5t34991H' => 'bol', 'BolC6t35895H' => 'bol', 'BolC6t37827H' => 'bol', 'BolC8t46870H' => 'bol', 'BolC8t51123H' => 'bol', 'BraA01t04573Z' => 'bra', 'BraA02t06483Z' => 'bra', 'BraA03t11697Z' => 'bra', 'BraA04t15898Z' => 'bra', 'BraA04t18809Z' => 'bra', 'BraA05t23109Z' => 'bra', 'BraA08t35625Z' => 'bra', 'BraA09t40685Z' => 'bra', 'BraA10t42484Z' => 'bra', 'C02p23000' => 'bna', 'C03p29710' => 'bna', 'C04p32390' => 'bna', 'C04p50990' => 'bna', 'C04p71230' => 'bna', 'C05p02050' => 'bna', 'C05p63280' => 'bna', 'C06p08130' => 'bna', 'C08p00730' => 'bna', 'C08p35300' => 'bna', 'CAN.G128.117' => 'can', 'CAN.G1585.15' => 'can', 'CAN.G1655.9' => 'can', 'CAN.G2061.1' => 'can', 'CAN.G234.19' => 'can', 'CAN.G538.4' => 'can', 'CANSAT01G0258' => 'cansat', 'CANSAT01G2890' => 'cansat', 'CANSAT25G1198' => 'cansat', 'CANSAT64G1659' => 'cansat', 'CARHR002960' => 'chi', 'CARHR059920' => 'chi', 'CARHR077650' => 'chi', 'CARHR139990' => 'chi', 'CARHR169990' => 'chi', 'CARHR170580' => 'chi', 'Carub.0001s0274' => 'cru', 'Carub.0002s1373' => 'cru', 'Carub.0003s0277' => 'cru', 'Carub.0004s2734' => 'cru', 'Carub.0005s2701' => 'cru', 'Ca_03433_v3' => 'car', 'Ca_05304_v3' => 'car', 'Ca_08051_v3' => 'car', 'Ca_08057_v3' => 'car', 'Ca_14804_v3' => 'car', 'Ca_16466_v3' => 'car', 'CBR_g45400' => 'cbr', 'Cc00_g13500' => 'ccan', 'Cc02_g25180' => 'ccan', 'Cc05_g06790' => 'ccan', 'Cc09_g05540' => 'ccan', 'CDE04G2741' => 'cde', 'CDE04G3092' => 'cde', 'CDE07G0170' => 'cde', 'CDE12G0058' => 'cde', 'CDE12G0357' => 'cde', 'Cfa011060' => 'cfa', 'Cfa014579' => 'cfa', 'Cfa019881' => 'cfa', 'Ciclev10016313m.g' => 'ccl', 'Ciclev10021713m.g' => 'ccl', 'Ciclev10032130m.g' => 'ccl', 'Ciclev10032373m.g' => 'ccl', 'Ciclev10033185m.g' => 'ccl', 'Ciclev10033570m.g' => 'ccl', 'Ciclev10033723m.g' => 'ccl', 'Ciclev10033824m.g' => 'ccl', 'CiPaw.03G174000' => 'cil', 'CiPaw.04G124300' => 'cil', 'CiPaw.05G111000' => 'cil', 'CiPaw.10G124200' => 'cil', 'CiPaw.13G025300' => 'cil', 'CiPaw.14G019700' => 'cil', 'ClCG02G017490' => 'cla', 'ClCG04G006020' => 'cla', 'ClCG06G002460' => 'cla', 'ClCG11G013710' => 'cla', 'COL.COLO4_12395' => 'col', 'COL.COLO4_33465' => 'col', 'COL.COLO4_35392' => 'col', 'Cpa.g.sc22.42' => 'cpa', 'Cpa.g.sc43.46' => 'cpa', 'Cpa.g.sc700.3' => 'cpa', 'Cpa.g.sc73.50' => 'cpa', 'Cre12.g557252' => 'cre', 'CsaV3_4G029090' => 'csa', 'CsaV3_5G030320' => 'csa', 'CsaV3_6G008670' => 'csa', 'CsaV3_6G013070' => 'csa', 'CSS0003517' => 'camsi', 'CSS0006244' => 'camsi', 'CSS0008618' => 'camsi', 'CSS0010020' => 'camsi', 'CSS0022537' => 'camsi', 'CSS0030783' => 'camsi', 'CSS0038350' => 'camsi', 'CSS0038793' => 'camsi', 'CSS0046025' => 'camsi', 'CSS0049464' => 'camsi', 'CSS0050151' => 'camsi', 'DCAR_012995' => 'dca', 'DCAR_013501' => 'dca', 'DCAR_015804' => 'dca', 'DCAR_029495' => 'dca', 'DCAR_031199' => 'dca', 'Dinv10965' => 'din', 'Dinv12908' => 'din', 'Dinv14557' => 'din', 'Dinv14833' => 'din', 'Dinv23681' => 'din', 'Dinv37041' => 'din', 'Dinv37042' => 'din', 'Dinv43608' => 'din', 'Dinv44050' => 'din', 'Duzib052G1142' => 'dzi', 'Duzib106G0936' => 'dzi', 'Duzib132G0459' => 'dzi', 'Duzib133G0139' => 'dzi', 'Duzib138G0417' => 'dzi', 'Duzib177G1033' => 'dzi', 'Duzib248G1209' => 'dzi', 'Duzib248G1571' => 'dzi', 'Duzib251G0423' => 'dzi', 'ECA233G2244' => 'eca', 'ECA234G1525' => 'eca', 'ECA236G1964' => 'eca', 'ECA246G3606' => 'eca', 'ECA248G1781' => 'eca', 'ECA248G3057' => 'eca', 'EL10Ac1g00749' => 'bvu', 'EL10Ac5g11647' => 'bvu', 'EL10Ac6g13490' => 'bvu', 'EL10Ac9g20693' => 'bvu', 'Eucgr.A01798' => 'egr', 'Eucgr.A02161' => 'egr', 'Eucgr.B03488' => 'egr', 'Eucgr.D01221' => 'egr', 'FAN01G2467' => 'fan', 'FAN02G4121' => 'fan', 'FAN03G3285' => 'fan', 'FAN05G2227' => 'fan', 'FAN06G0713' => 'fan', 'FAN06G3652' => 'fan', 'FAN07G1201' => 'fan', 'FAN09G1442' => 'fan', 'FAN10G0608' => 'fan', 'FAN10G1463' => 'fan', 'FAN12G1595' => 'fan', 'FAN14G5640' => 'fan', 'FAN17G0628' => 'fan', 'FAN19G3159' => 'fan', 'FAN22G0882' => 'fan', 'FAN26G3358' => 'fan', 'FAN28G2590' => 'fan', 'FvH4_1g29390' => 'fve', 'FvH4_4g23860' => 'fve', 'FvH4_6g45080' => 'fve', 'FvH4_7g10390' => 'fve', 'Glyma.03G005000' => 'gma', 'Glyma.03G109400' => 'gma', 'Glyma.06G296000' => 'gma', 'Glyma.07G116000' => 'gma', 'Glyma.09G243900' => 'gma', 'Glyma.11G249800' => 'gma', 'Glyma.12G109700' => 'gma', 'Glyma.18G007400' => 'gma', 'Glyma.18G249600' => 'gma', 'Glyma.19G121000' => 'gma', 'Gohir.A01G016100' => 'ghi', 'Gohir.A03G126800' => 'ghi', 'Gohir.A08G029100' => 'ghi', 'Gohir.A08G057800' => 'ghi', 'Gohir.A11G224100' => 'ghi', 'Gohir.A12G137800' => 'ghi', 'Gohir.A13G160100' => 'ghi', 'Gohir.D01G016100' => 'ghi', 'Gohir.D02G150200' => 'ghi', 'Gohir.D05G319900' => 'ghi', 'Gohir.D08G039800' => 'ghi', 'Gohir.D08G067100' => 'ghi', 'Gohir.D11G238300' => 'ghi', 'Gohir.D12G141800' => 'ghi', 'Gohir.D13G165300' => 'ghi', 'Gorai.002G017800' => 'gra', 'Gorai.004G038600' => 'gra', 'Gorai.004G069700' => 'gra', 'Gorai.005G168500' => 'gra', 'Gorai.007G252300' => 'gra', 'Gorai.008G153300' => 'gra', 'Gorai.013G197400' => 'gra', 'GSVIVG01010471001' => 'vvi', 'GSVIVG01011367001' => 'vvi', 'GSVIVG01018296001' => 'vvi', 'GSVIVG01027372001' => 'vvi', 'GSVIVG01029902001' => 'vvi', 'GSVIVG01030544001' => 'vvi', 'GSVIVG01030916001' => 'vvi', 'GSVIVG01038418001' => 'vvi', 'HanXRQChr01g0017601' => 'han', 'HanXRQChr05g0151161' => 'han', 'HanXRQChr06g0166641' => 'han', 'HanXRQChr09g0260031' => 'han', 'HanXRQChr12g0372201' => 'han', 'HanXRQChr13g0406461' => 'han', 'HanXRQChr16g0521171' => 'han', 'HanXRQChr17g0542631' => 'han', 'HanXRQChr17g0562531' => 'han', 'Haze_02861' => 'cav', 'Haze_13130' => 'cav', 'Haze_20369' => 'cav', 'Hma1.2p1_0065F.1_g035590' => 'hma', 'Hma1.2p1_0191F.1_g083280' => 'hma', 'Hma1.2p1_0275F.1_g110645' => 'hma', 'Hma1.2p1_0275F.1_g110650' => 'hma', 'Hma1.2p1_0632F.1_g192430' => 'hma', 'Hma1.2p1_0723F.1_g208821' => 'hma', 'Hma1.2p1_0823F.1_g224670' => 'hma', 'Hma1.2p1_0875F.1_g231380' => 'hma', 'Hma1.2p1_1325F.1_g275720' => 'hma', 'Hma1.2p1_1508F.1_g287770' => 'hma', 'Hma1.2p1_2588F.1_g324960' => 'hma', 'HPP92_000925' => 'vpl', 'HPP92_001706' => 'vpl', 'HPP92_014874' => 'vpl', 'HPP92_014886' => 'vpl', 'HPP92_014887' => 'vpl', 'HPP92_014895' => 'vpl', 'HPP92_018001' => 'vpl', 'HPP92_020679' => 'vpl', 'HPP92_023199' => 'vpl', 'HPP92_024539' => 'vpl', 'HPP92_026686' => 'vpl', 'Hund13308' => 'sun', 'Hund16153' => 'sun', 'Hund17100' => 'sun', 'Hund25461' => 'sun', 'Hund27409' => 'sun', 'Lalb_Chr03g0029281' => 'lal', 'Lalb_Chr03g0040691' => 'lal', 'Lalb_Chr07g0195351' => 'lal', 'Lalb_Chr14g0365061' => 'lal', 'Lalb_Chr19g0126321' => 'lal', 'Lalb_Chr19g0135341' => 'lal', 'Lalb_Chr24g0401221' => 'lal', 'Lj1A730T48' => 'lonja', 'Lj1A732T23' => 'lonja', 'Lj1g0011034' => 'lja', 'Lj1g0022740' => 'lja', 'Lj2A413T17' => 'lonja', 'Lj3A1067G58' => 'lonja', 'Lj3g0007927' => 'lja', 'Lj3g0011994' => 'lja', 'Lj3g0015915' => 'lja', 'Lj7A548G45' => 'lonja', 'Lj9A554G27' => 'lonja', 'Lsat_1_v5_gn_1_82540' => 'lsa', 'Lsat_1_v5_gn_3_41540' => 'lsa', 'Lsat_1_v5_gn_4_39281' => 'lsa', 'Lsat_1_v5_gn_4_66861' => 'lsa', 'Lsat_1_v5_gn_5_154440' => 'lsa', 'Lsat_1_v5_gn_7_12320' => 'lsa', 'Lsat_1_v5_gn_8_147560' => 'lsa', 'Manes.01G273900' => 'mes', 'Manes.05G055900' => 'mes', 'Manes.08G155500' => 'mes', 'Manes.09G134700' => 'mes', 'Manes.12G012400' => 'mes', 'Manes.13G148900' => 'mes', 'Mapoly0037s0066' => 'mpo', 'MBI02_g23396_MAGBIO' => 'mbi', 'MBI04_g13837_MAGBIO' => 'mbi', 'MBI06_g09269_MAGBIO' => 'mbi', 'MBI06_g12146_MAGBIO' => 'mbi', 'MBI06_g44585_MAGBIO' => 'mbi', 'MBI19_g13595_MAGBIO' => 'mbi', 'MCO09G794' => 'mco', 'MD00G1102900' => 'mdo', 'MD07G1110100' => 'mdo', 'MD09G1089700' => 'mdo', 'MD12G1014800' => 'mdo', 'MD13G1118100' => 'mdo', 'MD14G1012400' => 'mdo', 'MD17G1079100' => 'mdo', 'Medtr0258s0040' => 'mtr', 'Medtr3g085460' => 'mtr', 'Medtr7g081300' => 'mtr', 'Medtr7g087440' => 'mtr', 'Medtr8g007175' => 'mtr', 'MELO3C011870.2' => 'cme', 'MELO3C019155.2' => 'cme', 'MELO3C022283.2' => 'cme', 'MELO3C034167.2' => 'cme', 'MELO3C034789.2' => 'cme', 'Migut.B01517' => 'egut', 'Migut.E00020' => 'egut', 'Migut.H01058' => 'egut', 'Migut.K00187' => 'egut', 'Migut.N01732' => 'egut', 'MSTRG.17122' => 'ama', 'MSTRG.20681' => 'ama', 'MSTRG.2458' => 'ama', 'MSTRG.26198' => 'ama', 'MSTRG.28149' => 'ama', 'Nitab4.5_0000062g0580' => 'nta', 'Nitab4.5_0000228g0030' => 'nta', 'Nitab4.5_0000563g0270' => 'nta', 'Nitab4.5_0000635g0050' => 'nta', 'Nitab4.5_0000998g0070' => 'nta', 'Nitab4.5_0003596g0020' => 'nta', 'Nitab4.5_0004427g0010' => 'nta', 'Nitab4.5_0010533g0020' => 'nta', 'Nn1g03992' => 'nnu', 'Nn1g06657' => 'nnu', 'Nn3g16479' => 'nnu', 'Nn3g19395' => 'nnu', 'Nn4g22346' => 'nnu', 'Nn6g33789' => 'nnu', 'Oeu011250.3' => 'oeu', 'Oeu031416.2' => 'oeu', 'Oeu034907.1' => 'oeu', 'Oeu037448.3' => 'oeu', 'Oeu041275.4' => 'oeu', 'Oeu041667.1' => 'oeu', 'Oeu044218.1' => 'oeu', 'Os02g0652300' => 'osa', 'Os03g0322800' => 'osa', 'Os04g0101700' => 'osa', 'Os04g0545100' => 'osa', 'Os11g0129600' => 'osa', 'Os11g0483900' => 'osa', 'Os12g0126200' => 'osa', 'Peaxi162Scf00103g00109' => 'pax', 'Peaxi162Scf00153g00079' => 'pax', 'Peaxi162Scf00206g00029' => 'pax', 'Peaxi162Scf00853g00016' => 'pax', 'PGR004G2230' => 'pgr', 'PGR042G1571' => 'pgr', 'PGR042G1672' => 'pgr', 'PGR042G3098' => 'pgr', 'PGR102G3209' => 'pgr', 'PGSC0003DMG400003300' => 'stu', 'PGSC0003DMG400021680' => 'stu', 'PGSC0003DMG400028206' => 'stu', 'PGSC0003DMG402031176' => 'stu', 'Phvul.001G103100' => 'pvu', 'Phvul.001G261100' => 'pvu', 'Phvul.008G048000' => 'pvu', 'Phvul.010G045300' => 'pvu', 'Phvul.011G113500' => 'pvu', 'Potri.002G138700' => 'ptr', 'Potri.008G175301' => 'ptr', 'Potri.010G060700' => 'ptr', 'Potri.013G069000' => 'ptr', 'Potri.013G136200' => 'ptr', 'Potri.014G049800' => 'ptr', 'Pp3c9_8380' => 'ppa', 'Prupe.1G226900' => 'ppe', 'Prupe.2G133600' => 'ppe', 'Prupe.3G235700' => 'ppe', 'Prupe.7G026000' => 'ppe', 'Psat3g053560' => 'psa', 'Psat3g084600' => 'psa', 'Psat4g223440' => 'psa', 'Psat5g095360' => 'psa', 'Psat7g189480' => 'psa', 'PSO017G7373' => 'pso', 'PSO063G5175' => 'pso', 'PSO339G5356' => 'pso', 'PSO384G1114' => 'pso', 'PSO478G3255' => 'pso', 'PSO541G1052' => 'pso', 'PSO675G0279' => 'pso', 'PSO675G8836' => 'pso', 'PSO732G0753' => 'pso', 'PSO761G0141' => 'pso', 'PSO782G5225' => 'pso', 'QL03p053535' => 'qlo', 'QL04p029897' => 'qlo', 'QL07p016023' => 'qlo', 'QL08p038101' => 'qlo', 'RcHm_v2.0_Chr1g0333241' => 'rch', 'RcHm_v2.0_Chr1g0348091' => 'rch', 'RcHm_v2.0_Chr1g0374341' => 'rch', 'RcHm_v2.0_Chr2g0158401' => 'rch', 'RcHm_v2.0_Chr2g0162481' => 'rch', 'RcHm_v2.0_Chr3g0495561' => 'rch', 'RcHm_v2.0_Chr4g0430431' => 'rch', 'RcHm_v2.0_Chr5g0052121' => 'rch', 'RcHm_v2.0_Chr7g0213781' => 'rch', 'Rhsim01G0141300' => 'rsi', 'Rhsim03G0044600' => 'rsi', 'Rhsim03G0044800' => 'rsi', 'Rhsim06G0148300' => 'rsi', 'Rhsim07G0037200' => 'rsi', 'Rhsim07G0037300' => 'rsi', 'Rhsim12G0026400' => 'rsi', 'RhsimUnG0240500' => 'rsi', 'Sabra08G0133700' => 'sbr', 'Sabra10G0045300' => 'sbr', 'Sabra10G0045400' => 'sbr', 'Sabra13G0059900' => 'sbr', 'Sabra13G0115400' => 'sbr', 'Sabra14G0035300' => 'sbr', 'SalBow1G0965' => 'sbo', 'SalBow1G5803' => 'sbo', 'SalBow5G2818' => 'sbo', 'SalBow5G5078' => 'sbo', 'SalBow5G5121' => 'sbo', 'SalBow8G3809' => 'sbo', 'Sc02g0003150' => 'sci', 'Sc04g0010090' => 'sci', 'Sc07g0007730' => 'sci', 'Sc07g0007760' => 'sci', 'Sc12g0002890' => 'sci', 'Sc22g0004620' => 'sci', 'Sc26g0001650' => 'sci', 'Sed0015559' => 'sed', 'Sed0015567' => 'sed', 'Sed0016967' => 'sed', 'Sed0023650' => 'sed', 'Sed0027216' => 'sed', 'SEGI_04579' => 'sgi', 'SEGI_19160' => 'sgi', 'SEGI_26773' => 'sgi', 'SEGI_28155' => 'sgi', 'SEGI_28237' => 'sgi', 'SEGI_29313' => 'sgi', 'SGA_v2.0_scaffold109G31100' => 'sas', 'SGA_v2.0_scaffold199G41184' => 'sas', 'SGA_v2.0_scaffold240G44155' => 'sas', 'SGA_v2.0_scaffold240G44165' => 'sas', 'SGA_v2.0_scaffold340G49328' => 'sas', 'SGA_v2.0_scaffold52G19236' => 'sas', 'SGA_v2.0_scaffold87G27153' => 'sas', 'SHI13621' => 'shi', 'SHI50556' => 'shi', 'SMO364G0853' => 'smo', 'Solyc01g089980.4' => 'sly', 'Solyc10g008470.3' => 'sly', 'Solyc10g062200.2' => 'sly', 'Solyc10g062220.2' => 'sly', 'Solyc10g081270.2' => 'sly', 'Sopen01g035840' => 'spe', 'Sopen10g004290' => 'spe', 'Sopen10g026830' => 'spe', 'Sopen10g031770' => 'spe', 'Sp1g00130' => 'spa', 'Sp1g02530' => 'spa', 'Sp3g02600' => 'spa', 'Sp4g26840' => 'spa', 'Sp5g02940' => 'spa', 'Sp5g22330' => 'spa', 'TAR374G1683' => 'tar', 'TAR375G0539' => 'tar', 'TAR622G0108' => 'tar', 'TAR623G1304' => 'tar', 'TAR624G0091' => 'tar', 'TAR624G0134' => 'tar', 'TAR624G0316' => 'tar', 'TAR624G0579' => 'tar', 'TAR627G0233' => 'tar', 'TAR629G2560' => 'tar', 'THA.LOC104801179' => 'tha', 'THA.LOC104802887' => 'tha', 'THA.LOC104807881' => 'tha', 'THA.LOC104814063' => 'tha', 'THA.LOC104820808' => 'tha', 'THA.LOC104827590' => 'tha', 'Thecc.01G396300' => 'tca', 'Thecc.02G176400' => 'tca', 'Thecc.02G209900' => 'tca', 'Thecc.05G236900' => 'tca', 'Thhalv10001587m.g' => 'esa', 'Thhalv10006159m.g' => 'esa', 'Thhalv10008491m.g' => 'esa', 'Thhalv10018989m.g' => 'esa', 'Thhalv10021157m.g' => 'esa', 'TPR.G20662' => 'tpr', 'TPR.G28277' => 'tpr', 'TPR.G29109' => 'tpr', 'TPR.G32149' => 'tpr', 'TPR.G7149' => 'tpr', 'TWI18G1443' => 'twi', 'TWI23G1115' => 'twi', 'TWI32G0779' => 'twi', 'TWI34G0389' => 'twi', 'TWI36G1522' => 'twi', 'TWI59G0024' => 'twi', 'TWI75G0528' => 'twi', 'TWI75G1418' => 'twi', 'unitig_0.g1339' => 'ugi', 'unitig_0.g2670' => 'ugi', 'unitig_26.g8853' => 'ugi', 'unitig_748.g7219' => 'ugi', 'unitig_750.g28409' => 'ugi', 'vmacro01064' => 'vma', 'vmacro06664' => 'vma', 'vmacro07373' => 'vma', 'vmacro07621' => 'vma', 'vmacro13506' => 'vma', 'vmacro21067' => 'vma', 'vmacro22789' => 'vma', 'VMungo0331G1515' => 'vmu', 'VMungo1127G1379' => 'vmu', 'VMungo1383G1929' => 'vmu', 'VMungo1383G2492' => 'vmu', 'VMungo1383G3548' => 'vmu', 'Zm00001eb015380' => 'zma', 'Zm00001eb075190' => 'zma', 'Zm00001eb089680' => 'zma', 'Zm00001eb169680' => 'zma', 'Zm00001eb195910' => 'zma', 'Zm00001eb249130' => 'zma', 'Zm00001eb281430' => 'zma', 'Zm00001eb419000' => 'zma', 'Zm00001eb427870' => 'zma' ) $gf_id = 'HOM05D000976' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000976' ) $data_identifier = 'HOM05D000976' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 6, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 5, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 7, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1